PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g39820.2.p
Common NameBRADI_3g39820, LOC100833406
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 438aa    MW: 47783.2 Da    PI: 6.498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g39820.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05262281120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  Bradi3g39820.2.p 262 FSCPVCAKTFNRYNNMQMHM 281
                       89*****************9 PP

2zf-C2H212.50.00046348368323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F  k + ++H +++
  Bradi3g39820.2.p 348 CRKCGKAFAVKGDWRTHEKNC 368
                       *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.77E-5257284No hitNo description
Gene3DG3DSA:3.30.160.606.3E-6262281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.159262289IPR007087Zinc finger, C2H2
SMARTSM003550.14262284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
SMARTSM00355220309341IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.99E-6328366No hitNo description
Gene3DG3DSA:3.30.160.603.2E-5333366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621346366IPR007087Zinc finger, C2H2
SMARTSM0035582346366IPR015880Zinc finger, C2H2-like
SMARTSM00355220372395IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEDPYASFLK NVNPYYYYCT SSFPTTAPPA HPFPPYAASL YPASMAAAAA PHHNHYPSFH  60
QNPPPEQPRY HYGNTAMAPA PPSPPLREAL PLLSLSPTRA SARRRHVDDF DCSDSENDDC  120
YTPQDHHHQA APAARAPLFA DLNCVPSCCD DGDGDPMDVE AAAWPADDAA VALRIGLPAG  180
SAEADLLSAL SARATAAGGA EAEMEDDDED EFKASGGHGQ EQEEVPLGYF SSWAAGAPVG  240
RLNKGQYWIP TPTQILMGPT QFSCPVCAKT FNRYNNMQMH MWGHGSQYRK GPESLRGIQP  300
TAMLRLPCYC CAQGCRNNID HPRAKPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD  360
WRTHEKNCGR LWYCLCGSEF KHKRSLKDHA RAFGHGHGAA FGCGGNADAD ADGFFDEDDE  420
GAVSEIEHDG GGRPSMR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6269401e-167EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572359.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-116ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0Q3JKN70.0A0A0Q3JKN7_BRADI; Uncharacterized protein
STRINGBRADI3G39820.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-103C2H2 family protein